Author

Thaleia Ntiniakou

Barcelona Supercomputing CenterORCID 0000-0001-6470-9885Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Systems Biology· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:benchmark study· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Alfonso ValenciaiD· 2 shared Arnau MontagudiD· 2 shared Adam ŠmelkoiD· 1 shared Alejandro Madrid-ValienteiD· 1 shared Alexander George FletcheriD· 1 shared Charilaos AkasiadisiD· 1 shared Dirk DrasdoiD· 1 shared Fergus CooperiD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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2 shared papersSystems Biology

Alfonso ValenciaORCID

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2 papers

Recent·Most cited

Systems BiologybioRxivPreprintJul 16, 2025

Open Benchmarking for Cell-Based Multiscale Models: Lessons from a Community Initiative

Thaleia Ntiniakou, James M. Osborne, Jieling Zhao…·Arnau Montagud

This paper presents a community-driven benchmarking initiative for cell-based multiscale models, highlighting variations in tool implementations and advocating for standardized benchmarks and interoperability.

DOI 10.1101/2025.07.16.664358

benchmark studybenchmarking

𝕏 PostBluesky

Systems BiologyFrontiers in Molecular BiosciencesPeer-reviewedApr 6, 2022

Optimizing dosage-specific treatments in a multi-scale model of a tumor growth

Miguel Ponce-de-León, Arnau Montagud, Charilaos Akasiadis…·Alfonso Valencia

The paper develops an HPC-optimized workflow to explore treatment strategies for tumor growth using a multi-scale model, finding that spatial geometry and population variability affect treatment effectiveness.

11 citations

statistical modelbenchmarking

𝕏 PostBluesky