Author

Adam Šmelko

Barcelona Supercomputing CenterORCID 0000-0001-8334-2783Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:software / tool· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:experimental assay· 1

Frequent Co-Authors

Vincent NoëliD· 2 shared Alejandro Madrid-ValienteiD· 1 shared Alexander George FletcheriD· 1 shared Alfonso ValenciaiD· 1 shared Arnau MontagudiD· 1 shared Dirk DrasdoiD· 1 shared Emmanuel BarillotiD· 1 shared Fergus CooperiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersSystems Biology

Vincent NoëlORCID

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2 papers

Recent·Most cited

Systems BiologybioRxivPreprintJul 16, 2025

Open Benchmarking for Cell-Based Multiscale Models: Lessons from a Community Initiative

Thaleia Ntiniakou, James M. Osborne, Jieling Zhao…·Arnau Montagud

This paper presents a community-driven benchmarking initiative for cell-based multiscale models, highlighting variations in tool implementations and advocating for standardized benchmarks and interoperability.

DOI 10.1101/2025.07.16.664358

benchmark studybenchmarking

𝕏 PostBluesky

BioinformaticsBMC BioinformaticsPeer-reviewedMay 24, 2024

MaBoSS for HPC environments: Implementations of the continuous time Boolean model simulator for large CPUclusters and GPU accelerators

Adam Šmelko, Miroslav Kratochvíl, Emmanuel Barillot, Vincent Noël

The paper introduces parallel implementations of the continuous time Boolean model simulator for large CPU clusters and GPU accelerators to handle increased model complexity.

4 citations

experimental assaysoftware / tool

𝕏 PostBluesky