Alper Uzun

OncoContour provides an interactive platform for visualizing and analyzing cancer incidence data across geographic regions and demographics using a no-code interface.

THRESHOLD evaluates gene saturation in disease progression using TCGA datasets, revealing co-regulation patterns and identifying biomarkers in bladder, prostate, and breast cancers.

This study compares PPI networks between high-risk MYCN amplified and non-amplified neuroblastoma patients to identify predictive biomarkers.

VGC is a VCF file visualization and analysis tool that provides variant data extraction, visualization, and integration with external databases for gene function and variant interpretation.

The paper identifies a distinct molecular subtype of breast cancer associated with MMR deficiency, showing unique proteomic networks and variable clinical outcomes across subtypes.

The paper identifies subgroups of preterm birth patients with shared protein interaction networks and pathway enrichments using sequencing and bioinformatic analysis.

Proteinarium analyzes and visualizes protein-protein interaction networks across multiple samples to identify disease-related gene clusters.

VIVA is a VCF file visualization tool that allows users to interactively evaluate, share, and generate publication-quality graphics from genomic data.