Jean‐Jacques Fournié

The paper develops an agent-based model to simulate monocyte differentiation into nurse-like cells in chronic lymphocytic leukemia and identifies patient-specific macrophage phenotypes linked to cancer survival.

The paper introduces an open-source software for analyzing spatial transcriptomics data, demonstrated on human and murine tissue datasets.

The paper builds a Boolean model to simulate macrophage polarization in an in-vitro chronic lymphocytic leukaemia model, revealing the formation of tumour-associated macrophages.

The paper introduces a software tool for analyzing and visualizing multimodal single-cell RNA-seq datasets, demonstrating its use on a CITE-seq dataset of PBMCs.

The paper introduces a tool for high-throughput scoring and visualization of gene set-based signatures across scRNA-seq datasets using t-SNE.