BioinformaticsbioRxivPreprint
Benchmarking single-cell foundation models for real-world RNA-seq data integration
Siyu Han, Tamas Ryszard Sztanka-Toth, Enes Senel…·Alex Javidi
This study benchmarks single-cell foundation models for data integration using real-world RNA-seq data and finds that fine-tuned scGPT_CP performs best in technical correction while scVI is the top overall performer.
DOI 10.64898/2026.04.17.719314