Author

Ruoyun Xiong

Duke UniversityORCID 0000-0001-8107-3452Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Alex JavidiiD· 1 shared Courtney GunteriD· 1 shared Denis A. SmirnoviD· 1 shared Derya UnutmaziD· 1 shared Elizabeth S. Aiken· 1 shared Enes SeneliD· 1 shared Jaymala PateliD· 1 shared Joel GreshockiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Alex JavidiORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJan 20, 2026

Benchmarking Next-Generation Sequencing Platforms: A Comprehensive Comparison Of Single-Cell RNA-Seq from Ultima UG 100 vs. Illumina NovaSeq X Plus

Ruoyun Xiong, Jaymala Patel, Tamas Ryszard Sztanka-Toth…·Alex Javidi

This study compares the performance of Ultima UG 100 and Illumina NovaSeq X Plus platforms for single-cell RNA sequencing, finding comparable results in cell type identification and gene expression.

DOI 10.64898/2026.01.16.699571

humanscRNA-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJun 24, 2024

BioMapAI: Artificial Intelligence Multi-Omics Framework Modeling of Myalgic Encephalomyelitis / Chronic Fatigue Syndrome

Ruoyun Xiong, Elizabeth S. Aiken, Ryan Caldwell…·Julia Oh

BioMapAI uses a deep neural network to analyze multi-omics data from ME/CFS patients, identifying biomarkers and revealing disrupted biological connections.

5 citations

humanmetagenomics

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