Tamas Ryszard Sztanka-Toth

This study benchmarks single-cell foundation models for data integration using real-world RNA-seq data and finds that fine-tuned scGPT_CP performs best in technical correction while scVI is the top overall performer.

This study compares the performance of Ultima UG 100 and Illumina NovaSeq X Plus platforms for single-cell RNA sequencing, finding comparable results in cell type identification and gene expression.

Spacemake processes and analyzes large-scale spatial transcriptomics data across different technologies, offering a modular and scalable pipeline with integration capabilities.