Author

Nasim Sanati

Oregon Health & Science UniversityORCID 0000-0001-6681-0418Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:database / resource· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Guanming WuiD· 2 shared Patrick Conley· 2 shared Allison P. HeathiD· 1 shared Amanda L. CharbonneauiD· 1 shared Andrew AdeyiD· 1 shared Ashley N. AndersoniD· 1 shared Boris AguilariD· 1 shared Brett S. WalkeriD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersBioinformatics

Guanming WuORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintDec 24, 2025

FHIR as a Unifying Format for Genomic Research Data Tracking, Aggregation, and Integration

Nasim Sanati, Brian Walsh, Parker Gray…·Kyle Ellrott

The paper explores using FHIR to integrate genomic research data from multiple repositories and evaluates its effectiveness for structured data representation and aggregation.

DOI 10.64898/2025.12.22.695544

bulk RNA-seqstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJun 5, 2023

Illuminating Dark Proteins using Reactome Pathways

Timothy Brunson, Nasim Sanati, Lisa R. Matthews…·Guanming Wu

The paper predicts functional interactions of dark proteins with Reactome pathways using a random forest classifier and develops a web portal to visualize these interactions.

5 citations

proteomicsstatistical model

𝕏 PostBluesky

Developmental BiologybioRxivPreprintSep 30, 2022

Dual states of Bmi1-expressing intestinal stem cells drive epithelial development and tissue regeneration

Nicholas R. Smith, Sidharth K. Sengupta, Patrick Conley…·Melissa Hirose Wong

The paper identifies a dual state of Bmi1-expressing intestinal stem cells that drive epithelial development and tissue regeneration through dynamic Wnt signaling.

DOI 10.1101/2022.09.30.509798

mousescRNA-seq

𝕏 PostBluesky