Author

Maria Fällman

Umeå Centre for Microbial ResearchORCID 0000-0001-6874-6384Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Microbiology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:cell type annotation· 1 Organism:mouse· 1 Assay:spatial transcriptomics· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

A. K. M. Firoj MahmudiD· 2 shared Kemal AvicaniD· 2 shared Anna Fahlgren· 1 shared Firoj Mahmood· 1 shared Helen H. WangiD· 1 shared Juliette GriffiéiD· 1 shared K. Nilsson· 1 shared Kristina L. NilssoniD· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersMolecular Biology

A. K. M. Firoj MahmudORCID

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3 papers

Recent·Most cited

MicrobiologybioRxivPreprintOct 7, 2025

6S RNA facilitates bacterial virulence and adaptation at the epithelial barrier

Oytun Sarigöz, Valerie Diane Valeriano, Ummehan Avican…·Kemal Avican

This study identifies 6S RNA's role in enhancing virulence gene expression in Yersinia pseudotuberculosis during intestinal colonization.

DOI 10.1101/2025.10.07.681022

mousespatial transcriptomics

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Molecular BiologybioRxivPreprintFeb 11, 2022

RpoN is required for a functional type III secretion system in Yersinia pseudotuberculosis

A. K. M. Firoj Mahmud, Roberto Navais, K. Nilsson…·Maria Fällman

This study shows that RpoN is essential for Type III secretion in Yersinia pseudotuberculosis by regulating the expression of secretion apparatus genes through a sigma factor hierarchy involving RpoE.

1 citation

bacteria (other)experimental assay

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BioinformaticsBioinformaticsPeer-reviewedDec 12, 2020

ProkSeq for complete analysis of RNA-seq data from prokaryotes

A. K. M. Firoj Mahmud, Nicolas Delhomme, Soumyadeep Nandi, Maria Fällman

ProkSeq is an RNA-seq analysis pipeline for prokaryotes that automates quality control, differential expression, normalization, and visualization.

21 citations

bacteria (other)whole-genome sequencing

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