Author

Oytun Sarigöz

Umeå Centre for Microbial ResearchORCID 0000-0002-1134-6627Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Organism:mouse· 1 Assay:spatial transcriptomics· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Kemal AvicaniD· 2 shared Anna Fahlgren· 1 shared Firoj Mahmood· 1 shared Helen H. WangiD· 1 shared Juliette GriffiéiD· 1 shared Kristina L. NilssoniD· 1 shared Maria FällmaniD· 1 shared Narmin Hasanzade· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersMolecular Biology

Kemal AvicanORCID

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2 papers

Recent·Most cited

Molecular BiologybioRxivPreprintMar 14, 2026

Sample-derived cDNA guides broad host RNA depletion for in vivo pathogen transcriptomics

Tuğrul Doruk, Oytun Sarigöz, Kemal Avican

This paper introduces a method to deplete host RNA from infected tissues, enabling efficient detection of bacterial transcripts in vivo with reduced sequencing depth.

DOI 10.64898/2026.03.12.711445

bulk RNA-seqexperimental assay

𝕏 PostBluesky

MicrobiologybioRxivPreprintOct 7, 2025

6S RNA facilitates bacterial virulence and adaptation at the epithelial barrier

Oytun Sarigöz, Valerie Diane Valeriano, Ummehan Avican…·Kemal Avican

This study identifies 6S RNA's role in enhancing virulence gene expression in Yersinia pseudotuberculosis during intestinal colonization.

DOI 10.1101/2025.10.07.681022

mousespatial transcriptomics

𝕏 PostBluesky