Author

Soumyadeep Nandi

Amity UniversityORCID 0000-0001-5003-2754Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Organism:bacteria (other)· 2 Research Focus:differential expression· 2 Assay:DNA methylation· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:whole-genome sequencing· 2

Frequent Co-Authors

A. K. M. Firoj MahmudiD· 1 shared Ajay Kumar Saw· 1 shared Anupam BhattacharyaiD· 1 shared Anusha Singhal· 1 shared Ayush MadhokiD· 1 shared Juan Ignacio Barrasa· 1 shared Kalappa MuniyappaiD· 1 shared Kasi ManikandaniD· 1 shared

Activity by Year

2018-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 10 mutual co-author links

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1 shared paperBioinformatics

A. K. M. Firoj MahmudORCID

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4 papers

Recent·Most cited

Molecular BiologybioRxivPreprintMay 13, 2024

Cyclic di-AMP regulates genome stability and drug resistance in Mycobacterium through RecA-dependent and -independent recombination

Sudhanshu Mudgal, Nisha Goyal, Kasi Manikandan…·Krishna Murari Sinha

This study shows that cyclic di-AMP in Mycobacterium regulates genomic stability and drug resistance by modulating RecA-dependent and -independent DNA recombination and SOS response.

DOI 10.1101/2024.05.13.593841

bacteria (other)DNA methylation

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BioinformaticsbioRxivPreprintNov 8, 2022

Combined promoter-capture Hi-C and Hi-C analysis reveals a fine-tuned regulation of 3D chromatin architecture in colorectal cancer

Ajay Kumar Saw, Ayush Madhok, Anupam Bhattacharya…·Sanjeev Galande

The paper combines promoter-capture Hi-C and Hi-C data to analyze 3D chromatin architecture in colorectal cancer, identifying dysregulated genes and histone modifications associated with tumor-suppressive programs.

DOI 10.1101/2022.11.08.515643

humanHi-C

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BioinformaticsBioinformaticsPeer-reviewedDec 12, 2020

ProkSeq for complete analysis of RNA-seq data from prokaryotes

A. K. M. Firoj Mahmud, Nicolas Delhomme, Soumyadeep Nandi, Maria Fällman

ProkSeq is an RNA-seq analysis pipeline for prokaryotes that automates quality control, differential expression, normalization, and visualization.

21 citations

bacteria (other)whole-genome sequencing

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Molecular BiologyJournal of Biological ChemistryPeer-reviewedAug 1, 2018

PTE, a novel module to target Polycomb Repressive Complex 1 to the Cyclin D2 oncogene.

Sarina R. Cameron, Soumyadeep Nandi, Tatyana G. Kahn…·Yuri B. Schwartz

The paper identifies a PRC1 targeting element (PTE) and CpG-island that together form a Polycomb Response Element for the CCND2 oncogene, showing their role in coordinating PRC1 and PRC2 recruitment.

4 citations

humanChIP-seq

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