Simon G. Krattinger

WheatPanRef provides a unified linear pan-reference genome for wheat, improving read alignment and enabling integration of genomic resources across diverse accessions.

The paper presents genomic resources for the Timopheevii wheat lineage, revealing evolutionary dynamics including homoeologous exchange, genome instability, and geographic range expansion.

This paper presents a chromosome-scale genome of Thinopyrum bessarabicum, showing the J genome is not part of polyploid Thinopyrum ancestry and identifies genomic features linked to salt tolerance.

The paper identifies a conserved glycoside hydrolase family in leaf rust fungi that interacts with barley LecRKs to mediate non-host resistance, showing functional conservation across cereal species.

The paper traces the origin of non-brittle rachis alleles in wheat using k-mer-based analysis of a diversity panel and a chromosome-scale wheat assembly, showing distinct origins for different Ttbtr1 alleles.

The paper identifies a wheat resistance gene Lr41 that directly recognizes an effector AvrLr41 through its pseudokinase domain, revealing a non-canonical immune mechanism involving kinase-type receptors and helper proteins.

This study presents a barley pangenome revealing structural variation linked to traits like disease resistance and plant architecture, highlighting its role in adaptive evolution.

The paper analyzes the genetic composition and history of the bread wheat D genome using a pangenome of its donor species, revealing contributions from discrete subpopulations of Aegilops tauschii.

The paper identifies a CLAMT1 gene responsible for strigolactone production and Striga susceptibility in pearl millet by comparing genome assemblies of susceptible and resistant lines.

The paper reports chromosome-scale genome assemblies of eight quinoa accessions, identifying structural variations and providing resources for genetic studies.

This study annotates the wheat pan-transcriptome de novo and identifies gene diversity and expression patterns across multiple wheat cultivars and tissues.

This study uses high-throughput genotyping to analyze spelt genetic diversity and reveals its divergence from bread wheat and independent introduction into Europe.

The paper compares the genome sequences of two wheat cultivars to identify structural variations and their evolutionary mechanisms.

The paper develops NLR-Annotator to identify NLR genes in wheat genomes and characterizes their structure, phylogeny, and expression, finding 3,400 NLR loci with 88% low basal expression.