M. Spannagl

The paper presents genomic resources for the Timopheevii wheat lineage, revealing evolutionary dynamics including homoeologous exchange, genome instability, and geographic range expansion.

The paper introduces SelHap, a haplotype-based method to prioritize genomes for pangenome expansion by focusing on novel haplotypes, resulting in increased non-redundant sequence content.

The paper presents a pangenome and pantranscriptome of hexaploid oat, describing gene expression diversity and structural genome variation across 33 accessions and six tissues.

The paper identifies MKK3 haplotypes in barley that influence seed dormancy and end-use traits through post-domestication selection, linking them to climate adaptation.

The paper investigates subgenome-level variations in polyploid wheat cultivars under drought stress to understand how they affect yield and quality while adapting to environmental conditions.

The paper sequenced wild barley to identify genetic markers linked to agronomic traits and found novel loci for stem rust resistance and days to heading.

This study presents a barley pangenome revealing structural variation linked to traits like disease resistance and plant architecture, highlighting its role in adaptive evolution.

This study annotates the wheat pan-transcriptome de novo and identifies gene diversity and expression patterns across multiple wheat cultivars and tissues.

The paper presents a chromosome-scale genome assembly of Lablab purpureus, a neglected crop, and reports on its domestication history and genetic diversity, offering a model for inclusive orphan crop genomics.

The paper presents a chromosome-scale rye genome assembly to study genomic evolution and agronomic traits in Triticeae crops.

The paper reports high-quality genome sequences of European flint maize lines and analyzes genomic dynamics between European and US maize germplasm.

TRITEX improves chromosome-scale genome assemblies for Triticeae crops using open-source tools and multiple sequencing data types.

The paper identifies hidden genetic and epigenetic variation in polyploid wheat that contributes to local adaptation and suggests using methylation and transposon diversity for breeding.

The paper compares the genome sequences of two wheat cultivars to identify structural variations and their evolutionary mechanisms.

The paper analyzes the impact of transposable elements on genome structure and evolution in bread wheat, finding conserved TE distribution and chromatin structure across subgenomes.

The paper reports the de novo assembly of two European Flint maize lines to enhance the maize pan-genome.