Author

Kutay Deniz Atabay

Massachusetts Institute of TechnologyORCID 0000-0001-6920-5053Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Neuroscience· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:database / resource· 2 Approach:experimental assay· 2 Assay:imaging· 2 Assay:spatial transcriptomics· 2 Organism:zebrafish· 2 Research Focus:cell type annotation· 1 Organism:multiple species· 1 Research Focus:phylogenetics / evolution· 1

Frequent Co-Authors

Benjamin JudkewitziD· 2 shared Mykola KadobianskyiiD· 2 shared Peter W. ReddieniD· 2 shared Antonia H. GronebergiD· 1 shared Chanyoung ParkiD· 1 shared Daniil A. MarkoviD· 1 shared Johannes VeithiD· 1 shared Jörg HenningeriD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersSystems Biology

Benjamin JudkewitzORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Systems BiologySciencePeer-reviewedOct 29, 2026

✦ In-depth digest

Whole-body single-cell atlas of an adult vertebrate in homeostasis and regeneration

Kutay Deniz Atabay, Patrick Aoude, Chanyoung Park…·Peter W. Reddien

Region-stratified scRNA-seq of 607,370 cells plus 500-gene MERFISH maps adult Danionella cerebrum cell types body-wide, revealing fibroblast Hox and limb-identity programs and telencephalon regeneration dynamics.

6 citationstop 1%

multiple specieszebrafish

𝕏 PostBluesky

NeurosciencebioRxivPreprintMar 11, 2026

Multimodal reference brain atlas of adult Danionella cerebrum

Mykola Kadobianskyi, Jörg Henninger, Daniil A. Markov…·Benjamin Judkewitz

The paper creates a multimodal reference brain atlas for adult Danionella cerebrum, integrating anatomical, molecular, and functional data to study brain structure and sexual dimorphism.

3 citations

zebrafishspatial transcriptomics

𝕏 PostBluesky