Author

Patrick Aoude

Whitehead Institute for Biomedical ResearchORCID 0000-0003-0681-4438Unclaimed ORCID profile · follow to get notified of new preprints

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Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Assay:imaging· 1 Organism:multiple species· 1 Research Focus:phylogenetics / evolution· 1 Assay:scRNA-seq· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Benjamin JudkewitziD· 1 shared Chanyoung ParkiD· 1 shared Kutay Deniz AtabayiD· 1 shared Mykola KadobianskyiiD· 1 shared Olivier H. Paugois· 1 shared Peter W. ReddieniD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

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1 shared paperSystems Biology

Benjamin JudkewitzORCID

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1 paper

Recent·Most cited

Systems BiologySciencePeer-reviewedOct 29, 2026

✦ In-depth digest

Whole-body single-cell atlas of an adult vertebrate in homeostasis and regeneration

Kutay Deniz Atabay, Patrick Aoude, Chanyoung Park…·Peter W. Reddien

Region-stratified scRNA-seq of 607,370 cells plus 500-gene MERFISH maps adult Danionella cerebrum cell types body-wide, revealing fibroblast Hox and limb-identity programs and telencephalon regeneration dynamics.

6 citationstop 1%

multiple specieszebrafish

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