Author

John I. Hendry

Pennsylvania State UniversityORCID 0000-0001-6949-7404Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Synthetic Biology· 2 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:metabolomics· 2 Organism:bacteria (other)· 1 Organism:C. elegans· 1 Assay:proteomics· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Costas D. MaranasiD· 3 shared Alexander F. Benson· 1 shared Allison Z. WerneriD· 1 shared Andrew J. BorchertiD· 1 shared Anindita BandyopadhyayiD· 1 shared Annesha SenguptaiD· 1 shared Arjuna M. Subramanian· 1 shared Ashley N. Merrill· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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3 shared papersSynthetic Biology

Costas D. MaranasORCID

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3 papers

Recent·Most cited

Synthetic BiologyMetabolic EngineeringPeer-reviewedOct 1, 2026

Engineered Pseudomonas putida reconfigures metabolic fluxes to support energy demands during muconate bioproduction from lignin-related aromatics

Rebecca A. Wilkes, Patrick F. Suthers, Andrew J. Borchert…·Allison Z. Werner

This paper investigates how engineered Pseudomonas putida reconfigures metabolic fluxes to enhance muconate production from lignin-related aromatics.

DOI 10.1016/j.ymben.2026.102573

bacteria (other)metabolomics

Synthetic BiologymBioPeer-reviewedFeb 15, 2024

Genome streamlining to improve performance of a fast-growing cyanobacterium Synechococcus elongatus UTEX 2973

Annesha Sengupta, Anindita Bandyopadhyay, Debolina Sarkar…·Himadri B. Pakrasi

This paper streamlines the genome of Synechococcus elongatus UTEX 2973 to improve growth and productivity using CRISPR/Cas3 and computational tools.

15 citations

C. eleganswhole-genome sequencing

Systems BiologybioRxivPreprintAug 10, 2022

Proteome capacity constraints favor respiratory ATP generation

Yihui Shen, Hoang V. Dinh, Edward R. Cruz…·Joshua D. Rabinowitz

The paper shows mitochondrial respiration is more proteome-efficient than aerobic glycolysis in yeast and mammals, with flexibility arising from maintaining a fermentation-capable proteome.

9 citations

yeastproteomics