Author

Debolina Sarkar

Pennsylvania State UniversityORCID 0000-0002-4976-5536Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Debolina Sarkar1 paper · University of Arizona

Biology Disciplines

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Systems Biology· 2 Synthetic Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Organism:C. elegans· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1 Organism:zebrafish· 1

Frequent Co-Authors

Costas D. MaranasiD· 3 shared Anindita BandyopadhyayiD· 1 shared Annesha SenguptaiD· 1 shared Bertrand Joël HireliD· 1 shared George McDonald ChurchiD· 1 shared Himadri B. PakrasiiD· 1 shared Hoang V. DinhiD· 1 shared Isabelle Quilleré· 1 shared

Activity by Year

2021-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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3 shared papersSystems Biology

Costas D. MaranasORCID

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3 papers

Recent·Most cited

Genome streamlining to improve performance of a fast-growing cyanobacterium Synechococcus elongatus UTEX 2973

Annesha Sengupta, Anindita Bandyopadhyay, Debolina Sarkar, John I. Hendry, Max G. Schubert, Liu Deng, George McDonald Church, Costas D. Maranas, Himadri B. Pakrasi

This paper streamlines the genome of Synechococcus elongatus UTEX 2973 to improve growth and productivity using CRISPR/Cas3 and computational tools.

mBio · Feb 15, 2024Peer-reviewedSynthetic Biology

Quantifying the propagation of parametric uncertainty on flux balance analysis

Hoang V. Dinh, Debolina Sarkar, Costas D. Maranas

This paper quantifies how uncertainty in biomass coefficients and non-steady-state conditions affect flux balance analysis results.

Metabolic Engineering · Oct 28, 2021Peer-reviewedSystems Biology

Dissecting the Metabolic Reprogramming of Maize Root under Nitrogen Limiting Stress Condition

Niaz Bahar Chowdhury, Wheaton L. Schroeder, Debolina Sarkar, Nardjis Amiour, Isabelle Quilleré, Bertrand Joël Hirel, Costas D. Maranas, Rajib Saha

This study develops a genome-scale metabolic model for maize root to analyze metabolic reprogramming under nitrogen stress, identifying key metabolites involved in biomass growth and stress tolerance.

Journal of Experimental Botany · Sep 21, 2021Peer-reviewedSystems Biology