Ruiqi Lyu

This paper introduces BGOB, a deep learning framework for longitudinal microbiome interpolation, improving analysis of microbial community trajectories and revealing disease-related associations.

NetID identifies lineage-specific gene regulatory networks from scRNA-seq data by improving GRN inference through metacell-based analysis and avoids spurious correlations.

The paper evaluates ten differential expression methods for metatranscriptomics data using real and simulated datasets, finding the logistic-beta test has highest sensitivity and reasonable type I error control.