Apoena Aguiar Ribeiro

The paper identifies CD38⁺ endothelial remodeling as a spatially distinct vasculopathy feature in rapidly advancing oral inflammation using scRNA-seq and spatial proteomics.

This paper introduces BGOB, a deep learning framework for longitudinal microbiome interpolation, improving analysis of microbial community trajectories and revealing disease-related associations.

The paper evaluates ten differential expression methods for metatranscriptomics data using real and simulated datasets, finding the logistic-beta test has highest sensitivity and reasonable type I error control.

The paper introduces a BZINB model-based method for integrating microbiome and metabolome data, showing improved accuracy in identifying correlations compared to traditional methods.