Tariq Daouda

scDisentangle predicts single-cell transcriptional responses to perturbations by decomposing expression into residual components, outperforming existing methods in cytokine stimulation, infection, and genetic perturbations.

Neurotox identifies sequence-based neurotoxicity hallmarks across species using deep learning, showing structural changes correlate with loss of predicted neurotoxicity.

The paper uses CAMAP to predict SARS-CoV-2 MHC-I peptides, identifies 48 vaccine candidates covering most HLA haplotypes and strains, and provides an interactive portal for exploration.

The paper introduces CAMAP, an artificial neural network that predicts MHC-I peptide presentation by analyzing codon arrangement in mRNA sequences, improving prediction accuracy beyond traditional methods.