Author

Mathieu Dubois

Centre National de la Recherche ScientifiqueORCID 0000-0003-1490-7271Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:database / resource· 1 Organism:E. coli· 1 Research Focus:software / tool· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Claudine MédigueiD· 2 shared David VallenetiD· 2 shared Adelme BaziniD· 1 shared Alexandra CalteauiD· 1 shared Amandine PerriniD· 1 shared Catherine BrangeriD· 1 shared Catherine MatiasiD· 1 shared Christophe AmbroiseiD· 1 shared

Activity by Year

2018-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersBioinformatics

Claudine MédigueORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

BioinformaticsPLoS Computational BiologyPeer-reviewedMar 19, 2020

PPanGGOLiN: Depicting microbial diversity via a Partitioned Pangenome Graph

Guillaume Gautreau, Adelme Bazin, Mathieu Gachet…·David Vallenet

PPanGGOLiN partitions pangenome graphs to classify gene families into persistent, cloud, and shell partitions, revealing insights into genome dynamics and diversity.

282 citationstop 1%

whole-genome sequencingstatistical model

𝕏 PostBluesky

BioinformaticsMicrobial GenomicsPeer-reviewedSep 1, 2018

PlaScope: a targeted approach to assess the plasmidome of Escherichia coli strains

Guilhem Royer, Jean‐Winoc Decousser, Catherine Branger…·David Vallenet

PlaScope improves plasmid detection in E. coli by combining Centrifuge with a curated database, achieving high recall, specificity, and accuracy compared to existing tools.

58 citations

E. coliwhole-genome sequencing

𝕏 PostBluesky