Dominik Stanojević

Metaxa is a transformer-based model for classifying long Nanopore reads, outperforming existing tools on out-of-sample data and across different sequencing chemistries.

This study benchmarks Nanopore long read RNA sequencing in human cell lines, showing improved isoform resolution compared to short reads.

Rockfish improves 5-methylcytosine detection from Nanopore sequencing with higher accuracy and efficiency compared to existing methods.

Deep-learning correction of ultra-long nanopore Simplex reads lifts read accuracy up to 100-fold and yields phased telomere-to-telomere human assemblies without a second sequencing technology.