Avinash Sreedasyam

The paper identifies a supernumerary B-Chromosome in Atlantic switchgrass, showing its evolutionary origin and impact on gene expression and genomic diversity.

The paper identifies the genetic drivers of the G-locus in pecan trees using pangenome-integrated quantitative genomics, revealing a Mendelian super-gene responsible for dichogamy.

The paper evaluates challenges in creating consistent pangene sets across pangenomes, showing that annotation inconsistencies lead to misleading presence-absence variation interpretations.

This study uses over 700 pecan genotypes and a haplotype-resolved genome to identify gene pools, assess environmental adaptation, and predict future maladaptation risks.

This paper constructs a sorghum pangenome and identifies trait-associated variants to inform climate-aware genome-enabled breeding strategies.

The paper develops genomic resources to improve American chestnut resistance to pathogens through breeding and gene editing.

This study uses CRISPR-Cas9 to generate sorghum mutants and analyzes their nitrogen response and growth trajectory using high-throughput phenotyping.

This paper presents an updated soybean genome assembly (Wm82.a6) and compares it with other assemblies and Fiskeby III, revealing genomic heterogeneity and polymorphisms.

GENESPACE provides pan-genome annotations to analyze syntenic relationships across diverse eukaryotic genomes, revealing structural variation at multiple biological scales.

The paper uses genome resources from Setaria viridis to identify loci associated with climate response, seed shattering, and leaf angle, and validates a novel domestication gene.

The paper quantifies age-related somatic mutations and epimutations in a wild Populus trichocarpa tree over 330 years, showing lower mutation rates than annuals and distinct epimutation origins.

The paper integrates genomic, metabolomic, and network data to identify target genes involved in lignin biosynthesis/degradation in Populus trichocarpa.

The paper shows adaptation to copper-contaminated environments in Mimulus guttatus occurs through selection on pre-existing genetic variation rather than new mutations.