Author

Saeed S. Alahmari

Najran UniversityORCID 0000-0001-7344-9448Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:dimensionality reduction· 1 Assay:imaging· 1 Approach:statistical model· 1

Frequent Co-Authors

Andrew SchultziD· 2 shared Issam El NaqaiD· 2 shared Noemi AndoriD· 2 shared Vural TagaliD· 2 shared Aaron DiaziD· 1 shared Alexander Anderson· 1 shared Daniel Hannaby· 1 shared Hanlee P. JiiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

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2 shared papersBioinformatics

Andrew SchultzORCID

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2 papers

Recent·Most cited

A longitudinal data framework for context-specific genotype-to-phenotype mapping

Thomas A. Veith, Richard J. Beck, Vural Tagal, Tao Li, Saeed S. Alahmari, Jackson P. Cole, Daniel Hannaby, John Kyei, Xiaoqing Yu, Konstantin Maksin, Andrew Schultz, HoJoon Lee, Aaron Diaz, Janine Lupo, Issam ElNaqa, , Noemi Andor

The paper introduces CLONEID, a framework for organizing clone-resolved data to enable longitudinal genotype-to-phenotype mapping in experiments with repeated molecular and phenotypic measurements.

bioRxiv · May 7, 2025 · PreprintBioinformatics

Cell identity revealed by precise cell cycle state mapping links data modalities

Saeed S. Alahmari, Andrew Schultz, Jordan Albrecht, Vural Tagal, Zaid Ali Siddiqui, Sandhya Prabhakaran, Issam El Naqa, Alexander Anderson, Laura M. Heiser, Noemi Andor

The paper integrates sequencing and imaging data to map cell cycle states, linking transcriptome states to living cells with high resolution.

bioRxiv · Sep 4, 2024 · PreprintBioinformatics