Evolutionary BiologyBioinformatics AdvancesPeer-reviewed
AmpliPhy improves gene trees by adding homologous sequences without affecting alignments
Dongwook Kim, Manuel Gil, Kazutaka Katoh, Christophe Dessimoz
DOI 10.1093/bioadv/vbag222
Author
Dongwook Kim
Seoul National UniversityORCID 0000-0001-7386-3163Unclaimed ORCID profile · follow to get notified of new preprints
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Biology Disciplines
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2022-2026 · peak 2/yrCo-Author Collaboration Network
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Curved chords = mutual co-authorship4 papers
Recent·Most cited
- BiochemistryProceedings of the National Academy of SciencesPeer-reviewed
Structural basis of the catalytic and allosteric mechanism of bacterial acetyltransferase PatZ
Jun Bae Park, Gwanwoo Lee, Yu-Yeon Han…·Soung‐Hun Roh
This paper determines the structure of Escherichia coli PatZ, revealing its homotetrameric architecture and the role of the regulatory domain in catalytic activity and substrate specificity.
3 citations - BioinformaticsGenome Biology and EvolutionPeer-reviewed
Unicore enables scalable and accurate phylogenetic reconstruction with structural core genes
Dongwook Kim, Sukhwan Park, Martin Steinegger
Unicore identifies structural core genes for phylogenetic analysis using protein language models and structural strings, achieving faster runtime and broader taxonomic applicability than existing methods.
6 citations - BioinformaticsNucleic Acids ResearchPeer-reviewed
UFCG: database of universal fungal core genes and pipeline for genome-wide phylogenetic analysis of fungi
Dongwook Kim, Cameron L. M. Gilchrist, Jongsik Chun, Martin Steinegger
The paper introduces a database of universal fungal core genes and an automated pipeline for phylogenetic analysis of fungi, providing curated genes and tools for genome-wide studies.