Nídia Sequeira Trovão

This study benchmarks phylodynamic methods to analyze HIV-1 subtype C dispersal, finding robust spatial transmission patterns despite methodological variability in temporal estimates.

This paper identifies mitochondrial dysfunction as a key driver of RSV infection severity and long-term complications through multi-omic analysis across multiple datasets and systems.

The paper identifies the emergence of D1.1 reassortant H5N1 viruses in North America, which show increased transmissibility, host range, and human spillover potential.

This study analyzes the genetic diversity and transmission dynamics of H1N1pdm09 swine influenza viruses in Italy using whole genome sequencing and dynamic modeling, revealing multiple introductions and limited onward transmission with some sustained clusters.

The paper uses phylodynamic analysis to trace the introduction of PRRSV-2 into Costa Rica through international swine trade, identifying at least two distinct introductions.

This study evaluates subsampling strategies to optimize ancestral trait reconstruction in HIV-1 subtype C datasets, showing that subsampling by collection date, location, and risk group improves representativeness and reduces computational burden.