Author

Jia Gu

Chinese Academy of SciencesORCID 0000-0001-7498-9892Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 2 Approach:experimental assay· 2 Research Focus:software / tool· 2 Approach:benchmark study· 1 Organism:human· 1 Research Focus:variant calling· 1 Research Focus:variant effect prediction· 1 Assay:whole-exome sequencing· 1

Frequent Co-Authors

Shifu CheniD· 2 shared Yanqing ZhouiD· 2 shared Yaru CheniD· 2 shared Tanxiao HuangiD· 1 shared Wenting LiaoiD· 1 shared Yun Xu· 1 shared Zhicheng LiiD· 1 shared

Activity by Year

2018-2019 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Shifu ChenORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BioinformaticsBMC BioinformaticsPeer-reviewedDec 1, 2019

gencore: an efficient tool to generate consensus reads for error suppressing and duplicate removing of NGS data

Shifu Chen, Yanqing Zhou, Yaru Chen…·Jia Gu

gencore removes duplicates and suppresses sequencing errors in NGS data, handling UMIs and generating detailed reports for quality control.

91 citations

whole-genome sequencingwhole-exome sequencing

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedJul 7, 2018

✦ In-depth digest

fastp: an ultra-fast all-in-one FASTQ preprocessor

Shifu Chen, Yanqing Zhou, Yaru Chen, Jia Gu

fastp unifies FASTQ quality control, adapter trimming, filtering, and base correction in one scan; single-threaded, it ran 2–5 times faster than FASTQC, Cutadapt, or Trimmomatic.

29,759 citationstop 1%

humanbenchmark study

𝕏 PostBluesky