Author

Ming Ye

Ragon Institute of MGH, MIT and HarvardORCID 0000-0001-7680-8450Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cell Biology· 1 Microbiology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Organism:human· 2 Organism:Arabidopsis· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Alison Epstein RingeliD· 2 shared Aimi Kochi· 1 shared Bruce D. WalkeriD· 1 shared Caleb Scott-JosephiD· 1 shared Chad J. MungeriD· 1 shared Chenhao XuiD· 1 shared Elisabeth Gillham· 1 shared Erika A. PontilloiD· 1 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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2 shared papersMicrobiology

Alison Epstein RingelORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Fatty acid synthesis restricts HIV-1 infection through regulation of the nuclear envelope in CD4+ T cells

Joshua A. Acklin, Ming Ye, Erika A. Pontillo, Marc E Woros, Ethan H Krupa, Bruce D. Walker, Alison Epstein Ringel

bioRxiv · Sep 23, 2026 · PreprintMicrobiology

High-resolution transcriptomic profiling of Arabidopsis thaliana across a 37°C-40°C thermal gradient

Elisabeth Gillham, Jason Hu, Yifan Huang, Aimi Kochi, Kiran McDonald, Caleb Scott-Joseph, Chenhao Xu, Ming Ye, Nicholas J. Kaplinsky

This study profiles Arabidopsis thaliana transcriptomes across a 37°C-40°C thermal gradient to understand transcriptional mechanisms of thermotolerance loss.

bioRxiv · Jul 20, 2026 · PreprintPlant Biology

MARBL: A Live-Cell Method for Profiling Bioenergetic Heterogeneity by Noncanonical Methionine Labeling of the Cell Surface Proteome

Lillian R. Delacruz, Ming Ye, Kendra A. Libby, Keran Han, Chad J. Munger, YUNPING QIU, Irwin J. Kurland, Alison Epstein Ringel

MARBL profiles bioenergetic heterogeneity in live cells by noncanonical methionine labeling of the surface proteome, revealing metabolic resilience differences between immune cell types.

bioRxiv · Jun 2, 2026 · PreprintCell Biology