Author

Jenny Karlsson

Lund UniversityORCID 0000-0001-7681-0059Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:cell type annotation· 2 Research Focus:clustering· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Approach:Bayesian inference· 1 Research Focus:cell-cell communication· 1 Research Focus:deconvolution· 1

Frequent Co-Authors

David GisselssoniD· 3 shared Subhayan ChattopadhyayiD· 2 shared Anders ValindiD· 1 shared Arne ClaeysiD· 1 shared Caroline JanssoniD· 1 shared Dan Emil LindiD· 1 shared Eva JennischeiD· 1 shared Jimmy Van den EyndeniD· 1 shared

Activity by Year

2021-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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3 shared papersCancer Biology

David GisselssonORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Cancer BiologyThe Journal of PathologyPeer-reviewedAug 8, 2025

Spatial transcriptomics exploration of the primary neuroblastoma microenvironment unveils novel paracrine interactions

Joachim T. Siaw, Peter Merseburger, Marcus Borenäs…·Jimmy Van den Eynden

The paper uses spatial transcriptomics to analyze neuroblastoma microenvironments, identifying novel paracrine interactions between cancer cells and surrounding cells.

9 citationstop 4%

humanspatial transcriptomics

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Cancer BiologybioRxivPreprintMar 17, 2025

Inferring cell dynamics in stress-induced neuroblastoma cell cultures

Khrystyna Hafiichuk, Sara Hamis, Jenny Karlsson…·Subhayan Chattopadhyay

The paper quantifies cell dynamics and interactions in neuroblastoma cell cultures under stress, finding that cell-to-cell interactions drive phenotypic adaptation, which accelerates with lower nutrient levels.

DOI 10.1101/2025.03.17.643601

humanflow cytometry

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BioinformaticsBriefings in BioinformaticsPeer-reviewedJul 10, 2021

Tracing the evolution of aneuploid cancers from multiregional sequencing

Subhayan Chattopadhyay, Jenny Karlsson, Anders Valind…·David Gisselsson

This paper develops a semi-supervised algorithm to deconvolve clonal variants in tumors, accounting for tumor cell fraction and copy number changes across samples.

1 citation

humanwhole-genome sequencing

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