Aditi Shenoy

M-Ionic predicts metal ion binding sites from protein sequences using residue embeddings, achieving high accuracy for known ions and extending predictions to additional ions.

The paper evaluates AlphaFold-Multimer's performance on multi-chain protein complexes and introduces a new interface quality score.

The paper uses AlphaFold2 to predict structures for 65,484 human protein interactions, identifying high confidence models and disease-related mutations.

The paper predicts structures of large protein complexes using AlphaFold and Monte Carlo tree search, achieving accurate assemblies for some symmetric complexes.