Author

Marek Cmero

The University of MelbourneORCID 0000-0001-7783-5530Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Organism:human· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Organism:Drosophila· 1 Organism:mouse· 1

Frequent Co-Authors

Alicia OshlackiD· 2 shared N. DavidsoniD· 2 shared Allan MotyeriD· 1 shared Ashleigh N. SolanoiD· 1 shared Bowden RoryiD· 1 shared Breon SchmidtiD· 1 shared Callum J. SargeantiD· 1 shared Casey J. A. AnttilaiD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersBioinformatics

Alicia OshlackORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMay 1, 2026

SpatialBench: Comparative cross-platform benchmarking of high-resolution spatial transcriptomics using matched mouse lymphoid tissue

Ashleigh N. Solano, Raymond K. H. Yip, Changqing Wang…·Matthew E. Ritchie

SpatialBench evaluates spatial transcriptomics platforms using a mouse spleen model, finding consistent biological signals but varying resolution across technologies.

1 citation

mousespatial transcriptomics

𝕏 PostBluesky

BioinformaticsGenome biologyPeer-reviewedOct 22, 2021

MINTIE: identifying novel structural and splice variants in transcriptomes using RNA-seq data

Marek Cmero, Breon Schmidt, Ian J. Majewski…·N. Davidson

MINTIE identifies novel structural and splice variants in transcriptomes using RNA-seq data, outperforming existing methods in detecting a wide range of variants.

31 citations

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsF1000ResearchPeer-reviewedMar 7, 2019

Fast and accurate differential transcript usage by testing equivalence class counts

Marek Cmero, N. Davidson, Alicia Oshlack

The paper introduces a method for differential transcript usage analysis using equivalence class counts, showing comparable sensitivity and speed to exon-level counts.

7 citations

humanDrosophila

𝕏 PostBluesky