Author

Sara S Fonseca Costa

SIB Swiss Institute of BioinformaticsORCID 0000-0001-7794-7997Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Approach:statistical model· 2 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Organism:multiple species· 1

Frequent Co-Authors

Frederic BastianiD· 2 shared Julien RouxiD· 2 shared Julien WollbrettiD· 2 shared Marc Robinson‐RechaviiD· 2 shared Marta RosikiewicziD· 2 shared Alessandro Brandulas CammarataiD· 1 shared Amina EchchikiiD· 1 shared Angélique Escoriza· 1 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersGenomics

Frederic BastianORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintMar 31, 2022

Robust data-driven gene expression inference for RNA-seq using curated intergenic regions

Alessandro Brandulas Cammarata, Sara S. Fonseca Costa, Marta Rosikiewicz…·Marc Robinson‐Rechavi

The paper introduces a method to improve gene expression calling in RNA-Seq by using intergenic read counts as a background reference, showing better consistency across biological replicates.

4 citations

bulk RNA-seqstatistical model

𝕏 PostBluesky

BioinformaticsNucleic Acids ResearchPeer-reviewedSep 15, 2020

The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals

Frederic Bastian, Julien Roux, Anne Niknejad…·Marc Robinson‐Rechavi

Bgee provides an integrated expression atlas and comparative transcriptomics resource for multiple animal species using curated healthy wild-type expression data.

189 citationstop 1%

multiple speciesbulk RNA-seq

𝕏 PostBluesky