Author

Julien Wollbrett

SIB Swiss Institute of BioinformaticsORCID 0000-0002-3099-3117Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Approach:statistical model· 2 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Organism:multiple species· 1

Frequent Co-Authors

Frederic BastianiD· 2 shared Julien RouxiD· 2 shared Marc Robinson‐RechaviiD· 2 shared Marta RosikiewicziD· 2 shared Sara S. Fonseca CostaiD· 2 shared Alessandro Brandulas CammarataiD· 1 shared Amina EchchikiiD· 1 shared Angélique Escoriza· 1 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersGenomics

Frederic BastianORCID

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2 papers

Recent·Most cited

Robust data-driven gene expression inference for RNA-seq using curated intergenic regions

Alessandro Brandulas Cammarata, Sara S. Fonseca Costa, Marta Rosikiewicz, Julien Roux, Julien Wollbrett, Frederic Bastian, Marc Robinson‐Rechavi

The paper introduces a method to improve gene expression calling in RNA-Seq by using intergenic read counts as a background reference, showing better consistency across biological replicates.

bioRxiv · Mar 31, 2022 · PreprintGenomics

The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals

Frederic Bastian, Julien Roux, Anne Niknejad, Aurélie Comte, Sara S Fonseca Costa, Tarcisio Mendes de Farias, Sébastien Moretti, Gilles Parmentier, Valentine Rech de Laval, Marta Rosikiewicz, Julien Wollbrett, Amina Echchiki, Angélique Escoriza, Walid H. Gharib, Mar Gonzàlez-Porta, , Marc Robinson‐Rechavi

Bgee provides an integrated expression atlas and comparative transcriptomics resource for multiple animal species using curated healthy wild-type expression data.

Nucleic Acids Research · Sep 15, 2020Peer-reviewedBioinformatics