Simone Duprat

Chromosome-Scale Genome Assembly of Australian Finger Lime and Resequencing Reveal the Hidden Diversity of Oceanian Citrus

The paper generates a chromosome-scale genome assembly for an Australian finger lime and uses resequencing to catalog genetic diversity in Oceanian citrus, revealing population structure and hybridization patterns.

A super-pangenome for cultivated citrus reveals evolutive features during the allopatric phase of their reticulate evolution

The paper constructs a citrus super-pangenome from four ancestral species, revealing evolutionary patterns and genetic diversity through gene annotation, resequencing, and PAV analysis.

ERGA-BGE genome of Noah's Ark shell (Arca noae Linnaeus, 1758), a Mediterranean bivalve species

The paper presents the chromosome-level genome assembly of Arca noae, a Mediterranean bivalve, providing evolutionary insights and genomic resources for studying environmental adaptation.

The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

The paper describes the European Reference Genome Atlas (ERGA) pilot project, which tests a decentralized model for producing high-quality reference genomes across 98 European species.