Arnaud Lemainque

Chromosome-Scale Genome Assembly of Australian Finger Lime and Resequencing Reveal the Hidden Diversity of Oceanian Citrus

The paper generates a chromosome-scale genome assembly for an Australian finger lime and uses resequencing to catalog genetic diversity in Oceanian citrus, revealing population structure and hybridization patterns.

A super-pangenome for cultivated citrus reveals evolutive features during the allopatric phase of their reticulate evolution

The paper constructs a citrus super-pangenome from four ancestral species, revealing evolutionary patterns and genetic diversity through gene annotation, resequencing, and PAV analysis.

Lifespan prolonging mechanisms and insulin upregulation without fat accumulation in long-lived reproductives of a higher termite

The paper investigates molecular mechanisms of longevity in termite reproductives, finding upregulated IIS pathway genes without fat accumulation.

Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing

This paper reports a telomere-to-telomere chromosome-scale assembly of the banana genome using Oxford Nanopore long-read sequencing.

Long-reads assembly of the Brassica napus reference genome, Darmor-bzh

The paper presents a new long-read assembly of the Brassica napus Darmor-bzh genome using nanopore sequencing, optical and genetic maps, resulting in a highly contiguous and complete reference genome.

FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing

FORK-seq maps DNA replication at single-molecule resolution in yeast, revealing previously missed initiation and termination events.

Mapping DNA replication with nanopore sequencing

The paper uses nanopore sequencing and a neural network to identify BrdU-labelled DNA tracts in yeast during replication, showing they align with early-firing origins.

High-quality de novo genome assembly of the Dekkera bruxellensis UMY321 yeast isolate using Nanopore MinION sequencing

The paper presents a high-quality de novo genome assembly of Dekkera bruxellensis UMY321 using Nanopore and Illumina sequencing, providing insights into genomic variability within the species.

de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer

The paper evaluates nanopore-only genome assemblies of yeast isolates using MinION, showing improved contiguity and structural variant detection compared to Illumina-only assemblies.