Taiwen Li

This study uses single-cell RNA sequencing and immune repertoire analysis to identify key immune cell subtypes and molecular changes in pemphigus vulgaris and assess the impact of prednisone treatment.

SELINA improves cell type annotation in single-cell RNA-seq by addressing batch effects and rare cell type characterization using domain adaptation and synthetic oversampling.

STRIDE deconvolves spatial transcriptomics data using single-cell RNA sequencing to estimate cell-type proportions and improve spatial gene and domain identification.

TISCH provides an interactive web resource for visualizing single-cell transcriptomic data of the tumor microenvironment across multiple cancer types.

TRUST detects TCR CDR3 regions in solid-tissue RNA-seq data with high sensitivity, even at low sequencing depth, and is applicable to large tumor cohorts.