Defne Surujon

This paper introduces transcriptomic entropy as a generalizable predictor of bacterial fitness and antibiotic sensitivity across species and stress conditions using RNA-Seq and experimental evolution data.

BFClust improves pan-genome clustering by providing confidence scores and enabling cluster augmentation, outperforming existing methods in accuracy and scalability.

This paper predicts bacterial survival and adaptive evolution using multi-omics data, network analysis, and machine learning to identify coordinated responses and gene adaptation.