Author

Ilka Reichardt

Gregor Mendel Institute of Molecular Plant BiologyORCID 0000-0001-7964-9352Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Genetics· 1

Signature Assays, Organisms & Methods

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Organism:Arabidopsis· 3 Approach:statistical model· 3 Assay:DNA methylation· 2 Research Focus:variant calling· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Research Focus:GWAS / association mapping· 1

Frequent Co-Authors

Magnus NordborgiD· 3 shared Viktoria NizhynskaiD· 3 shared Fernando A. RabanaliD· 2 shared Aleksandra E. KornienkoiD· 1 shared Alexander D. BezlepskyiD· 1 shared Almudena Molla MoralesiD· 1 shared Angela M. HancockiD· 1 shared Anna A. IgolkinaiD· 1 shared

Activity by Year

2017-2024 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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3 shared papersGenomics

Magnus NordborgORCID

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3 papers

Recent·Most cited

Towards an unbiased characterization of genetic polymorphism

Anna A. Igolkina, Sebastian Vorbrugg, Fernando A. Rabanal, Haijun Liu, Haim Ashkenazy, Aleksandra E. Kornienko, Joffrey Fitz, Max Collenberg, Christian Kubica, Almudena Molla Morales, Benjamin Jaegle, Travis Wrightsman, Vitaly Voloshin, Alexander D. Bezlepsky, Víctor Llaca, , Magnus Nordborg

The paper analyzes whole-genome polymorphism data from 27 Arabidopsis thaliana genomes to highlight challenges and insights in unbiased genetic variation characterization.

bioRxiv · May 30, 2024 · PreprintGenomics

Conditional GWAS of non-CG transposon methylation in Arabidopsis thaliana reveals major polymorphisms in five genes

Eriko Sasaki, Joanna Gunis, Ilka Reichardt, Viktoria Nizhynska, Magnus Nordborg

The paper uses conditional GWAS to show that CHG-methylation in Arabidopsis thaliana is influenced by five trans-regulators, which interact with known mCHH modifiers.

PLoS Genetics · Sep 9, 2022Peer-reviewedGenetics

Verification of Arabidopsis stock collections using SNPmatch - an algorithm for genotyping high-plexed samples

Rahul Pisupati, Ilka Reichardt, Ümit Seren, Pamela Korte, Viktoria Nizhynska, Envel Kerdaffrec, Kristina Uzunova, Fernando A. Rabanal, Danièle L. Filiault, Magnus Nordborg

The paper introduces SNPmatch, an algorithm for genotyping Arabidopsis strains from low-coverage sequencing data, and validates its accuracy using over 2000 strains.

Scientific Data · Dec 19, 2017Peer-reviewedGenomics