Author

Aleksandra E. Kornienko

Austrian Academy of SciencesORCID 0000-0002-8760-9630Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 3 Molecular Biology· 2

Signature Assays, Organisms & Methods

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Organism:Arabidopsis· 5 Approach:experimental assay· 3 Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Research Focus:benchmarking· 2 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Assay:whole-genome sequencing· 2

Frequent Co-Authors

Magnus NordborgiD· 5 shared Almudena Molla MoralesiD· 3 shared Anna A. IgolkinaiD· 2 shared Detlef WeigeliD· 2 shared Fernando A. RabanaliD· 2 shared Haijun LiuiD· 2 shared Haim AshkenazyiD· 2 shared Joffrey FitziD· 2 shared

Activity by Year

2023-2024 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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5 shared papersGenomics

Magnus NordborgORCID

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Author profile →

5 papers

Recent·Most cited

The 1001G+ project: A curated collection of Arabidopsis thaliana long-read genome assemblies to advance plant research

Carlos Alonso‐Blanco, Haim Ashkenazy, Pierre Baduel, Zhigui Bao, Claude Becker, Erwann Caillieux, Vincent Colot, Duncan B. Crosbie, Louna De Oliveira, Joffrey Fitz, Katrin Fritschi, Elizaveta Grigoreva, Ya‐Long Guo, Anette Habring, Ian R. Henderson, , Wenfei Xian

The paper curates and presents a collection of long-read genome assemblies for Arabidopsis thaliana accessions to enhance plant genome research.

bioRxiv · Dec 23, 2024 · PreprintGenomics

Towards an unbiased characterization of genetic polymorphism

Anna A. Igolkina, Sebastian Vorbrugg, Fernando A. Rabanal, Haijun Liu, Haim Ashkenazy, Aleksandra E. Kornienko, Joffrey Fitz, Max Collenberg, Christian Kubica, Almudena Molla Morales, Benjamin Jaegle, Travis Wrightsman, Vitaly Voloshin, Alexander D. Bezlepsky, Víctor Llaca, , Magnus Nordborg

The paper analyzes whole-genome polymorphism data from 27 Arabidopsis thaliana genomes to highlight challenges and insights in unbiased genetic variation characterization.

bioRxiv · May 30, 2024 · PreprintGenomics

Alternative silencing states of Transposable Elements in Arabidopsis

Valentin Hure, Florence Piron‐Prunier, Tamara Yehouessi, Clémentine Vitte, Aleksandra E. Kornienko, Gabrielle Adam, Magnus Nordborg, Angélique Deleris

This study identifies alternative silencing states of transposable elements in Arabidopsis, showing H3K27me3 can silence TEs independently of DNA methylation and reveals epigenetic variation across species.

bioRxiv · Mar 16, 2024 · PreprintMolecular Biology

Long non-coding RNAs contribute to DNA damage resistance in Arabidopsis thaliana

Nathalie Durut, Aleksandra E. Kornienko, Heiko A. Schmidt, Nicole Lettner, Mattia Donà, Magnus Nordborg, Ortrun Mittelsten Scheid

This study identifies three lncRNAs in Arabidopsis thaliana that are upregulated by DNA damage and whose deletion impairs stress recovery.

Genetics · Jul 19, 2023Peer-reviewedMolecular Biology

Population-level annotation of lncRNA transcription in Arabidopsis reveals extensive variation associated with TE-like silencing

Aleksandra E. Kornienko, Viktoria Nizhynska, Almudena Molla Morales, Rahul Pisupati, Magnus Nordborg

The paper annotates lncRNA loci in Arabidopsis thaliana across multiple natural accessions, revealing high expression variability and silencing linked to transposable elements.

bioRxiv · Mar 14, 2023 · PreprintGenomics