Viktoria Nizhynska

The paper identifies and addresses cytosine-conversion errors in bisulphite sequencing caused by transposase activity, providing a Python package to correct these errors.

This study shows that local adaptation in Arabidopsis thaliana involves strong and variable selection on multiple traits, with trade-offs and life-history strategies affecting fitness.

The paper analyzes whole-genome polymorphism data from 27 Arabidopsis thaliana genomes to highlight challenges and insights in unbiased genetic variation characterization.

The paper annotates lncRNA loci in Arabidopsis thaliana across multiple natural accessions, revealing high expression variability and silencing linked to transposable elements.

This study investigates gene-body methylation variation in Arabidopsis thaliana by analyzing F2 plants from a cross between two Swedish lines, showing genetic and environmental influences on methylation patterns.

The paper uses conditional GWAS to show that CHG-methylation in Arabidopsis thaliana is influenced by five trans-regulators, which interact with known mCHH modifiers.

The paper introduces SNPmatch, an algorithm for genotyping Arabidopsis strains from low-coverage sequencing data, and validates its accuracy using over 2000 strains.

The paper shows that rRNA gene copy number variation in Arabidopsis thaliana is heritable but unstably inherited, explaining why GWAS failed to identify the NORs as the source.