Author

Jalim Singh

Oregon Health & Science UniversityORCID 0000-0001-8027-6653Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cell Biology· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:deep learning· 2 Research Focus:trajectory inference· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Assay:fluorescence / live-cell microscopy· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Daniel M. ZuckermaniD· 2 shared Jeremy CoppermaniD· 2 shared Laura M. HeiseriD· 2 shared Alexander E. DaviesiD· 1 shared Ian C. McLeaniD· 1 shared Sean M. GrossiD· 1 shared Vaibhav MurthyiD· 1 shared Young Hwan ChangiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 28 mutual co-author links

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2 shared papersCell Biology

Daniel M. ZuckermanORCID

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2 papers

Recent·Most cited

Cell BiologyCell SystemsPeer-reviewedApr 2, 2026

Single-cell morphodynamical trajectories enable prediction of gene expression accompanying cell state change

Jeremy Copperman, Ian C. McLean, Sean M. Gross…·Laura M. Heiser

The paper develops MMIST, a computational approach linking live-cell morphodynamics to gene expression changes during cell state transitions.

8 citations

imagingbulk RNA-seq

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Cell BiologybioRxivPreprintJan 23, 2025

Inferring single-cell dynamics of a molecular reporter from unlabeled live-cell light microscopy data analyzed with delay embedding

Jalim Singh, Jeremy Copperman, Laura M. Heiser, Daniel M. Zuckerman

The paper uses delay embedding and VAE features to predict single-cell dynamics of a molecular reporter from unlabeled live-cell imaging data.

DOI 10.1101/2025.01.23.634593

humanfluorescence / live-cell microscopy

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