Author

Manish Kumar

University of California San DiegoORCID 0000-0001-8035-3399Unclaimed ORCID profile · follow to get notified of new preprints

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Manish Kumar1 paper

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:gene regulatory network inference· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Karsten ZengleriD· 2 shared Alexandre OliveiraiD· 1 shared Alina RenziD· 1 shared Andreas DrägeriD· 1 shared Arianna BasileiD· 1 shared Aswathy K. RaghuiD· 1 shared Bhanwar Lal PuniyaiD· 1 shared Brett G. OlivieriD· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersSystems Biology

Karsten ZenglerORCID

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2 papers

Recent·Most cited

Systems BiologybioRxivPreprintSep 24, 2024

FROG Analysis Ensures the Reproducibility of Genome Scale Metabolic Models

Karthik Raman, Miroslav Kratochvíl, Brett G. Olivier…·Rahuman S. Malik‐Sheriff

The paper introduces FROG analysis to standardize reproducibility assessments of genome-scale metabolic models, resulting in full reproducibility of all tested models.

9 citations

statistical modelbenchmarking

𝕏 PostBluesky

BioinformaticsBMC BioinformaticsPeer-reviewedNov 30, 2022

ChiMera: An easy to use pipeline for Bacterial Genome Based Metabolic Network Reconstruction, Evaluation and Visualization

Gustavo Tamasco, Manish Kumar, Karsten Zengler…·Ricardo Silva

ChiMera is a pipeline that reconstructs, evaluates, and visualizes bacterial genome-scale metabolic models using efficient tools and a user-friendly interface.

9 citations

bacteria (other)whole-genome sequencing

𝕏 PostBluesky