Author

Yulan B. van Oppen

University of GroningenORCID 0000-0001-8214-2907Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Organism:yeast· 2 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Assay:imaging· 1 Assay:proteomics· 1 Approach:variational autoencoder· 1

Frequent Co-Authors

Andreas Milias‐ArgeitisiD· 3 shared Alexander SchmidtiD· 1 shared Andre ZylstraiD· 1 shared Christian BleischwitziD· 1 shared Enrico Calzati· 1 shared Hugo P. MarkusiD· 1 shared Julius A. FülleborniD· 1 shared Katarzyna BuczakiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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3 shared papersSystems Biology

Andreas Milias‐ArgeitisORCID

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3 papers

Recent·Most cited

Systems BiologyMolecular Systems BiologyPeer-reviewedSep 14, 2026

Cell cycle-dependent protein dynamics in budding yeast resolved by deconvolution of bulk proteomics

Andre Zylstra, Mattia Rovetta, Silke R. Vedelaar…·Matthias Heinemann

The paper develops a computational method to deconvolve cell cycle-dependent protein dynamics from bulk proteomics data in budding yeast and identifies 563 proteins with such dynamics.

DOI 10.1038/s44320-026-00241-6

yeastproteomics

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Systems BiologyBioinformaticsPeer-reviewedMar 29, 2025

Gradient matching accelerates mixed-effects inferencefor biochemical networks

Yulan B. van Oppen, Andreas Milias‐Argeitis

The paper introduces GMGTS, a method that accelerates mixed-effects inference for biochemical networks by replacing numerical integration with gradient matching, improving computational efficiency.

1 citation

statistical modelvariational autoencoder

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Systems BiologyJournal of Cell SciencePeer-reviewedAug 17, 2022

TORC1 and PKA activity towards ribosome biogenesis oscillates in synchrony with the budding yeast cell cycle

Paolo Guerra, Luc-Alban Vuillemenot, Yulan B. van Oppen…·Andreas Milias‐Argeitis

The paper shows that TORC1 and PKA activity related to ribosome biogenesis oscillates with the budding yeast cell cycle under constant conditions.

30 citations

yeastimaging

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