Quantifying the genetic separability of disease subtypes
Chao Ning, Jasper Hof, Doug Speed
This paper introduces GenSep, a framework to quantify genetic separability of disease subtypes, showing current PRSs fall short of theoretical limits.
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Shandong Agricultural UniversityORCID 0000-0001-8247-1700Unclaimed ORCID profile · follow to get notified of new preprints
10 papers
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Chao Ning, Jasper Hof, Doug Speed
This paper introduces GenSep, a framework to quantify genetic separability of disease subtypes, showing current PRSs fall short of theoretical limits.
Jun Teng, Houcheng Li, Jian Yang…·Xiao Wang
The paper presents a cattle metabolome atlas linking genetic variants to metabolites and traits, revealing colocalization with eQTL and causal gene-metabolite-trait networks.
Di Yan, Qianli Fu, Kerui Xie…·Xinzhong Fan
The paper identifies host genetic and microbial factors associated with loin muscle weight in meat rabbits, finding links between cecal microbiota and host genes.
Jasper P. Hof, Chao Ning, Liam James Elgaard Quinn, Doug Speed
StratGWAS improves GWAS power by incorporating phenotype heterogeneity while maintaining specificity, identifying more significant loci in depression and other traits.
Kerui Xie, Zichen Song, Yanyan Wang…·Xinzhong Fan
This study uses whole-genome resequencing to trace the origin and domestication of Chinese domestic rabbits, identifying genetic adaptations and multiple potential origins.
Dan Wang, Kerui Xie, Yanyan Wang…·Xinzhong Fan
This study uses low-coverage sequencing and imputation to identify QTLs for wool traits in rabbits, finding six QTLs with phenotypic contributions up to 7.50%.
Dan Wang, Jun Teng, Pengju Zhao…·Chao Ning
This paper introduces an improved linear mixed model for multivariate genome-wide association studies that handles incomplete data and reduces computational complexity.
Pengju Zhao, Xianrui Zheng, Ying Yu…·Jianfeng Liu
The paper identifies and characterizes unknown porcine protein isoforms using tissue-based proteome maps and improves genome annotation.
Dan Wang, Hui Tang, Jianfeng Liu…·Chao Ning
The paper introduces a rapid mixed model for genome-wide epistatic association analysis that handles multiple polygenic effects and demonstrates its efficiency on yeast and human datasets.
Chao Ning, Dan Wang, Lei Zhou…·Jianfeng Liu
The paper develops efficient multivariate association algorithms for longitudinal GWAS, improving statistical power and computational speed for analyzing large-scale longitudinal data.