Author
Public Health Agency of CanadaORCID 0000-0001-8373-3653Unclaimed ORCID profile · follow to get notified of new preprints
5 papers
Recent·Most cited
Geneviève Labbé, Peter Kruczkiewicz, James A. Robertson…·John H. E. Nash
BioHansel rapidly and accurately genotypes bacterial pathogens from WGS data using canonical SNPs, enabling efficient surveillance and outbreak response.
Dillon O.R. Barker, Cody J. Buchanan, Chrystal Landgraff, Eduardo N. Taboada
MMMVI identifies SARS-CoV-2 variants of concern in metagenomic wastewater samples by detecting reads with multiple signature mutations.
Thomas C Matthews, Franklin Bristow, Emma Griffiths…·Gary Van Domselaar
A decentralized open-source web platform lets public health labs run outbreak sequencing pipelines on local compute, keeping data under their own governance while still exchanging results between instances.
Dillon Oliver Reese Barker, João André Carriço, Peter Kruczkiewicz…·Eduardo Napoleon Taboada
The paper introduces nAWC to identify stable clusters in bacterial populations using WGS data, showing it produces robust clusters that reflect population structure.
Aaron Petkau, Philip Mabon, Cameron Sieffert…·Gary Van Domselaar
SNVPhyl is a phylogenomics pipeline that identifies SNVs and constructs whole-genome phylogenies from WGS data, showing high sensitivity and specificity in outbreak detection.