Author

Emma Griffiths

Simon Fraser UniversityORCID 0000-0002-1107-9135Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 4 Assay:whole-genome sequencing· 4 Approach:statistical model· 3 Research Focus:benchmarking· 2 Approach:experimental assay· 2 Research Focus:software / tool· 2 Approach:benchmark study· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Damion DooleyiD· 3 shared Andrew G. McArthuriD· 2 shared Daniel FornikaiD· 2 shared Fiona S. L. BrinkmaniD· 2 shared Gary Van DomselaariD· 2 shared Leonid ChindelevitchiD· 2 shared Ruth TimmeiD· 2 shared William HsiaoiD· 2 shared

Activity by Year

2018-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

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3 shared papersBioinformatics

Damion DooleyORCID

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Author profile →

4 papers

Recent·Most cited

VIRUS-MVP: A framework for comprehensive surveillance of viral mutations and their functional impacts

Muhammad Zohaib Anwar, Ivan S. Gill, Madeline Iseminger, Anoosha Sehar, Emma Griffiths, Damion Dooley, Jun Duan, Khushi Vora, Gary Van Domselaar, Fiona S. L. Brinkman, Paul M. K. Gordon, William Hsiao

VIRUS-MVP tracks viral mutations and their functional impacts across multiple viruses, providing tools for analysis and visualization.

NAR Genomics and Bioinformatics · Oct 7, 2025Peer-reviewedBioinformatics

hAMRonization: Enhancing antimicrobial resistance prediction using the PHA4GE AMR detection specification and tooling

Catarina Inês Mendes, Emma Griffiths, Alexander Manuele, Daniel Fornika, Simon H. Tausch, Thanh Le-Viet, Jody Emile Phelan, Conor Joseph Meehan, Amogelang R. Raphenya, Brian P. Alcock, Elizabeth J. Culp, Federico Lorenzo, María Sol Haim, Adam A. Witney, Allison Black, , Finlay Maguire

hAMRonization standardizes AMR gene detection outputs from multiple tools into a unified format for easier analysis and integration.

bioRxiv · Mar 7, 2024 · PreprintBioinformatics

A schema for digitized surface swab site metadata in open-source DNA sequence databases

Jingzhang Feng, Devin Daeschel, Damion Dooley, Emma Griffiths, Marc William Allard, Ruth Timme, Yi Chen, Abigail B. Snyder

The paper develops a metadata schema for digitizing swab site locations in DNA sequence databases to improve data interoperability and automation.

mSystems · Feb 27, 2023Peer-reviewedGenomics

The Integrated Rapid Infectious Disease Analysis (IRIDA) Platform

Thomas C Matthews, Franklin Bristow, Emma Griffiths, Aaron Petkau, Josh Adam, Damion Dooley, Peter Kruczkiewicz, John Curatcha, Jennifer Cabral, Daniel Fornika, Geoffrey L. Winsor, Mélanie Courtot, Claire Bertelli, A. Roudgar, Pedro Feijão, , Gary Van Domselaar

A decentralized open-source web platform lets public health labs run outbreak sequencing pipelines on local compute, keeping data under their own governance while still exchanging results between instances.

bioRxiv · Jul 31, 2018 · PreprintBioinformatics