Author
Friedrich Schiller University JenaORCID 0000-0001-8458-1938Unclaimed ORCID profile · follow to get notified of new preprints
5 papers
Recent·Most cited
Malte Siemers, José Luis López, Bas E. Dutilh
PhageTransformer predicts phage hosts with high accuracy and speed, outperforming existing tools on benchmark datasets.
Anne Lippegaus, James R. J. Haycocks, E. O'Driscoll…·Kai Papenfort
The paper identifies and characterizes CisR, a small RNA that inhibits CTXφ phage production by repressing cep mRNA through Hfq-dependent base-pairing, linking phage activation to cell density and nutrient availability in V. cholerae.
José Luis López, Aristeidis Litos, Malte Siemers…·Bas E. Dutilh
The paper identifies synchronized codon usage evolution between functionally related genes across bacterial genomes, revealing new functional associations.
Ana Patrícia Graça, Vadim D. Nikitushkin, Mark Ellerhorst…·Gerald Lackner
This study identifies MftG as a mycofactocin dehydrogenase essential for ethanol metabolism in mycobacteria by linking mycofactocin oxidation to respiration.
Malte Siemers, Anne Lippegaus, Kai Papenfort
ChimericFragments identifies RNA-RNA interactions from chimeric RNA-seq data and outperforms existing methods.