Author

Justine Marsolier

Centre National de la Recherche ScientifiqueORCID 0000-0001-8464-9306Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:mouse· 2 Assay:scATAC-seq· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Céline VallotiD· 3 shared Elisabetta MarangoniiD· 2 shared Gregoire JouaultiD· 2 shared Mélissa SaichiiD· 2 shared Nicolas ServantiD· 2 shared Pacôme PrompsyiD· 2 shared Adeline DurandiD· 1 shared Ahmed DahmaniiD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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3 shared papersGenomics

Céline VallotORCID

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3 papers

Recent·Most cited

GenomicsbioRxivPreprintFeb 17, 2026

Matched single-cell chromatin, transcriptome, and surface marker profiling captures in vivo epigenomic reprogramming during basal-to-luminal transition in the mammary gland

Anna A. Karpukhina, Eve Moutaux, Adeline Durand…·Céline Vallot

The paper introduces OneCell CUT&Tag, a single-cell multi-omics method that captures chromatin, transcriptome, and surface marker data, revealing epigenomic reprogramming during mammary gland basal-to-luminal transition.

DOI 10.64898/2026.02.16.706078

mousescATAC-seq

Cancer BiologybioRxivPreprintMar 17, 2025

Identification of a shared persistence program in triple-negative breast cancer across treatments and patients

Léa Baudre, Grégoire Jouault, Pacôme Prompsy…·Céline Vallot

The paper identifies a shared persistence program in triple-negative breast cancer across treatments and patients, revealing key drivers and mechanisms of drug resistance.

DOI 10.1101/2025.03.17.643634

mousebulk RNA-seq

BioinformaticsNature CommunicationsPeer-reviewedNov 11, 2020

ChromSCape : an R/Shiny application for interactive analysis of single-cell chromatin profiles

Pacôme Prompsy, Pia Kirchmeier, Justine Marsolier…·Céline Vallot

ChromSCape is an R/Shiny tool for analyzing single-cell chromatin data, enabling subpopulation identification and differential region analysis in epigenomic studies.

33 citations

scATAC-seqscRNA-seq