Author

X. Shirley Liu

Dana-Farber Cancer InstituteORCID 0000-0001-8588-1182Unclaimed ORCID profile · follow to get notified of new preprints

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X. Shirley Liu3 papers · Dana-Farber Cancer Institute

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:ATAC-seq· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:ChIP-seq· 1 Assay:CRISPR screen· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Alexander Wu· 1 shared Ariel FeigliniD· 1 shared Avery S. FeitiD· 1 shared Henry W. LongiD· 1 shared Joseph PerkinsiD· 1 shared Len TaingiD· 1 shared Myles A BrowniD· 1 shared Nikolas KesteniD· 1 shared

Activity by Year

2018-2021 · peak 1/yr

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10 top collaborators · 36 mutual co-author links

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1 shared paperBioinformatics

Alexander Wu

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2 papers

Recent·Most cited

BioinformaticsGenomics Proteomics & BioinformaticsPeer-reviewedJul 18, 2021

CoBRA: Containerized Bioinformatics workflow for Reproducible ChIP/ATAC-seq Analysis - from differential peak calling to pathway analysis

Xintao Qiu, Avery S. Feit, Ariel Feiglin…·Henry W. Long

CoBRA provides a reproducible pipeline for ChIP/ATAC-seq analysis, including peak calling, clustering, and pathway analysis, with code available at the given URL.

42 citations

ChIP-seqATAC-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJan 11, 2018

Reducing False Positives in CRISPR/Cas9 Screens from Copy Number Variations

Alexander Wu, Tengfei Xiao, Teng Fei…·Wei Li

This paper develops methods to reduce false positives in CRISPR/Cas9 screens caused by copy number variations, improving screening accuracy.

10 citations

CRISPR screenstatistical model

𝕏 PostBluesky