Author

Avery S. Feit

Albert Einstein College of MedicineORCID 0000-0002-6586-9052Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:ChIP-seq· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Henry W. LongiD· 2 shared Myles A BrowniD· 2 shared Paloma CejasiD· 2 shared Shengqing Stan GuiD· 2 shared Xintao QiuiD· 2 shared Yingtian XieiD· 2 shared Adrienne LuomaiD· 1 shared Anna de PoloiD· 1 shared

Activity by Year

2021-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 42 mutual co-author links

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2 shared papersGenomics

Henry W. LongORCID

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2 papers

Recent·Most cited

MYC drives aggressive prostate cancer by disrupting transcriptional pause release at androgen receptor targets

Xintao Qiu, Nadia Boufaied, Tarek Hallal, Avery S. Feit, Anna de Polo, Adrienne Luoma, Walaa Alahmadi, Janie Larocque, Giorgia Zadra, Yingtian Xie, Shengqing Stan Gu, Qin Tang, Yi Zhang, Sudeepa Syamala, Ji-Heui Seo, , David P. Labbé

This study shows MYC overexpression disrupts AR transcriptional pause release, promoting aggressive prostate cancer progression.

Nature Communications · May 13, 2022Peer-reviewedGenomics

CoBRA: Containerized Bioinformatics workflow for Reproducible ChIP/ATAC-seq Analysis - from differential peak calling to pathway analysis

Xintao Qiu, Avery S. Feit, Ariel Feiglin, Yingtian Xie, Nikolas Kesten, Len Taing, Joseph Perkins, Shengqing Stan Gu, Yihao Li, Paloma Cejas, Ningxuan Zhou, Rinath M. Jeselsohn, Myles A Brown, X. Shirley Liu, Henry W. Long

CoBRA provides a reproducible pipeline for ChIP/ATAC-seq analysis, including peak calling, clustering, and pathway analysis, with code available at the given URL.

Genomics Proteomics & Bioinformatics · Jul 18, 2021Peer-reviewedBioinformatics

Avery S. Feit · henhao